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  • Graduate Student Handbook
  • Preface
  • PART I. POLICIES AND RESOURCES
  • CHAPTER 1
    • 🗒️Academic Policies
      • Academic Integrity
      • Policies and Procedures on Ethical Practices in Research
      • The Responsible Conduct in Research and Rigor and Reproducibility Courses
      • Ownership and Use of Research Data, Reagents, Records, Protocols, or Code
      • Responsibilities of Authors
        • Protecting Whistleblowers
        • Financial Conflict of Interest in Research
      • General Rules of Conduct for ISMMS Students
  • CHAPTER 2
    • 🗒️Administrative and Financial Policies
      • Tuition
        • PhD and MD/PhD in Biomedical Sciences or Neuroscience
        • Master’s Degree Programs and PhD in Clinical Research
      • Funding Package and Direct Compensation
      • Financial Assistance and Services
        • Financial Counseling
        • Satisfactory Academic Progress (SAP) for Financial Aid
        • Additional Work and Funding Resources
          • Supplemental Work-in-Another-Department (WIOD)
          • Tuition Waivers for Non-Faculty Mount Sinai Employees
          • Work-Study Positions
          • Travel Awards
  • CHAPTER 3
    • 🗒️Enrollment and Registration
      • Pre-Enrollment Policies
      • Registrar's Office
      • Guidelines for Registration and Cross-Registration
        • Add/Drop
        • Maintenance of Matriculation
        • Full-time Equivalency Status
        • Courses Taken at Partner Institutions
        • Visiting Scholars
        • Non-Matriculating Status and Course Auditing
        • Registration Holds
        • PhD Student Registration
      • Grading Policies
        • Grading, Course Examinations, and Missed Examinations
        • Calculation of GPA
        • Retaking Courses to Improve GPA
        • Graduate School Grade Appeals Process
        • Transfer Credits and Course Exemptions/Waivers
      • Satisfactory Academic Progress Policy
        • Time to Degree Policy
        • Academic Standing
        • Committee for Academic Review (CAR)
          • Membership of CAR
          • Appeals Process
        • Program-Specific Criteria for Satisfactory Academic Progress
      • Leave, Withdrawal, and Readmission
        • Leave of Absence (Voluntary)
        • Leave of Absence (Involuntary)
          • Administrative Leave
          • Academic Progress Leave
        • Parental Leave
        • Return from Military Service
        • Withdrawal and Readmission
        • PhD in Biomedical Sciences and Neuroscience Student Vacation Policy
      • Transcripts
  • Chapter 4
    • 🗒️Student Affairs and Services for Graduate Students
      • Student Services and Resources
        • Career Services and Strategy
        • International Student Services
        • Student Health Services
          • Student Mental Health Services
            • Referrals
            • WellConnect
        • Disability Services
        • Student Housing
          • Real Estate Office
        • Academic Informatics and Technology
          • The Library
          • Aufses Archives and Mount Sinai Records Management Division
          • Academic IT Support Center (ASCIT)
        • Affirmative Action
        • Safety and Security
          • Sexual Assault
          • Harassment
            • Definitions of Unacceptable Behavior
            • Grievance Committee
          • Mistreatment
            • Mistreatment Policy
            • Reporting and Consulting Mechanisms
          • Clery Act
          • Fire Safety
          • Alcohol and Drugs
            • Alcohol Policy – Levinson Student Center
            • Drug Testing
          • Infection Control
        • Office of the Ombudsperson
      • Campus-Wide Policies, Regulations, and Requirements
        • Rules of Conduct
        • Student Behavior
        • Faculty, Staff, and Student Relations
        • FERPA
        • ISMMS Social Media Guideline
        • Acceptable Use of Technology Policy
          • Use of Hardware and Software
          • Web, Data, and Cloud Storage
          • Email and Collaboration Technology Usage
          • Protected Health Information and Other Confidential Information
          • Secure Messaging and Encryption
        • ISMMS Policy on Business Conflicts of Interest
        • Student Intellectual Property
  • PART II. PROGRAMS OF STUDY
  • Chapter 1
    • PhD in Biomedical Sciences and Neuroscience
      • Program Information
      • Program Requirements
        • Curricular Requirements
        • Requirements to Graduate
        • Standards for Maintaining Satisfactory Progress
      • Curriculum
        • Seminars, Works-in-Progress, and Journal Clubs
        • Lab Rotations
          • Rotation Guidelines
          • MD/PhD Student Rotations
      • Selecting a Multidisciplinary Training Areas (MTA)
      • Advising
        • Academic Advisor
        • Selecting a Research Mentor
        • Changes to a Research Mentor-Mentee Partnership
          • Mentoring Changes due to the Relocation of the Research Mentor
          • Mentoring Changes due to an Unproductive Partnership
          • Procedures for Dispute Resolution
        • Thesis Advisory Committee
          • Specific Criteria
          • Procedures
      • Thesis Proposal
        • General Considerations
        • The Written Document
        • The Oral Presentation
        • The Thesis Proposal Committee
        • Deadline
      • Dissertation Defense
        • Written Document Format Options
        • The Dissertation Committee
        • The Defense and Seminar
        • Dissertation Deposit
      • Transfer to Master degree (MPhil or MSBS)
      • Program Specific Policies
        • Program Alumni and Alumni Association
  • Chapter on Multidisciplinary Training Areas
    • Multidisciplinary Training Areas
      • Artificial Intelligence and Emerging Technologies in Medicine (AIET)
        • Typical Curriculum
      • Cancer Biology (CAB)
        • Typical Curriculum
      • Development, Regeneration, and Stem Cells (DRS)
        • Typical Curriculum
      • Disease Mechanisms and Therapeutics (DMT)
        • Typical Curriculum
      • Genetics and Genomic Sciences (GGS)
        • Typical Curriculum
      • Immunology (IMM)
        • Typical Curriculum
      • Microbiology (MIC)
        • Typical Curriculum
      • Neuroscience (NEU)
        • Typical Curriculum
  • Chapter 2
    • MD/PhD Program
      • Program Information
      • Program Requirements
        • Curricular Requirements
        • Requirements to Graduate
        • Standards for Maintaining Satisfactory Progress
      • Curriculum
        • Core Graduate School/PhD Curriculum
        • Medical School/MD Curriculum
        • Annual MD/PhD Retreat
        • Milestones and Maximum Time to Degree
      • Advising
      • Thesis/Dissertation
  • Chapter 3
    • Clinical Research Education Program
      • Program Information
      • Program Competencies
      • Program Requirements
        • Curricular Requirements
          • PhD in Clinical Research (PhDCR)
        • Graduation Requirements
        • Standards for Maintaining Satisfactory Progress
          • Consequences of failure to maintain satisfactory progress
      • Curriculum
        • CRTP and MSCR Curriculum
        • PhDCR Curriculum
        • Requirements for Coursework on Responsible Conduct in Research (RCR)
        • Independent Study
        • Electives Offered in Other Programs or at Other Institutions
      • Advising
        • Faculty Advisors
        • Near-Peer Mentoring Program
        • Thesis Research Mentors (MSCR)
        • Dissertation Research Mentors (PhDCR)
        • Multidisciplinary Advisory Committee (MAC)
      • Master's Thesis
        • Registration, Mentor Selection, and Thesis Proposal
        • Master's Thesis First and Final Drafts
        • Timelines for the Master’s Thesis and Forms
        • Student Checkout Requirements
      • Doctoral Dissertation (PhDCR)
        • Written Dissertation Research Proposal
        • Oral Presentation of Dissertation Research Proposal
        • Admission to Candidacy
        • Written Dissertation, Defense, and Deposit
        • PhDCR Timeline and Required Forms
    • MD-MSCR/PORTAL Program
  • Chapter 4
    • MS in Biomedical Sciences (MSBS)
      • Program Information
      • Program Requirements
        • Curriculum Requirements
        • Requirements to Graduate
        • Standards for Maintaining Satisfactory Progress
      • Curriculum
      • Advising, Thesis Committee, and Research Mentor
      • Changes to a Research Mentor-Mentee Partnership
        • Mentoring Changes due to the Relocation of the Research Mentor
        • Mentoring Changes due to an Unproductive Partnership
        • Procedures for Dispute Resolution
      • MSBS Thesis
        • Formatting, Depositing, and Defending the Thesis
        • The Master’s Thesis Review Committee
        • Deadlines and Publications
        • Required Forms
      • Master's to PhD
  • Chapter 5
    • MS in Biomedical Data Science (MSBDS)
      • Program Information
      • Program Requirements
        • Curricular Requirements
        • Requirements to Graduate
        • Standards for Maintaining Satisfactory Progress
      • Curriculum
      • Advising
      • Capstone Project
  • Chapter 6
    • MS in Biostatistics Program
      • Program Information
      • Program Requirements
      • Curriculum
        • Theory and Methods Track
        • Clinical Applications Track
      • Capstone Project
  • Chapter 7
    • MS in Genetic Counseling
      • Program Information
      • Program Requirements
        • Curricular Requirements
        • Requirements to Graduate
        • Standards for Maintaining Satisfactory Progress
      • Advising
  • Chapter 8
    • MS in Healthcare Delivery Leadership (MSHCDL)
      • Program Information
      • Program Competencies
      • Program Requirements
        • Standards for Maintaining Satisfactory Progress
      • Curriculum
      • Advising
      • Capstone Project
  • Chapter 9
    • Master in Health Administration (MHA)
      • Program Information
      • Program Competencies
      • Program Requirements
      • Curriculum
      • Advising
      • Internship and Capstone Project
        • Students Enrolled or Pursuing 2 Programs
  • Chapter 10
    • Graduate Program in Public Health
      • Master of Public Health (MPH) and Advanced Certificate in Public Health (ACPH)
        • Program Information
        • Additional Information for International Students
        • Program Competencies
        • Program Requirements
          • Curricular Requirements
            • Master of Public Health
            • MD-MPH Program
            • DPM-MPH Program
            • Mount Sinai Residents and Fellow Physicians
            • Advanced Certificate in Public Health
          • Requirements to Graduate
          • Standards for Maintaining Satisfactory Progress
          • Students Enrolled or Pursuing 2 Programs
        • Curriculum
          • General Public Health Track
          • Biostatistics Track
          • Outcomes Research Track
          • Global Health Track
          • Health Care Management Track
          • Environmental Health Sciences Specialty Track
          • Epidemiology Track
          • Health Promotion & Disease Prevention Track
          • Advanced Certificate in Public Health
        • Advising
          • Specialty Track Advisors
        • Culminating Experience
          • Description of the Thesis, First Author Manuscript, and Capstone
          • Public Health Research Day
          • Culminating Experience Submission Deadlines
      • Master of Science in Epidemiology
        • Program Information
        • Additional Information for International Students
        • Program Competencies
        • Program Requirements
          • Requirements to Graduate
          • Standards for Maintaining Satisfactory Progress
        • Curriculum
        • Advising
        • Thesis or First Author Manuscript
          • Public Health Research Day
          • Thesis/Manuscript Submission Deadlines
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  1. Chapter 3
  2. Clinical Research Education Program

Program Competencies

The CLR Program supports the advancement of integrated and interdisciplinary education, training, and career development in Clinical and Translational Science. The National Centers for Translational Science (NCATS), in collaboration with the CTSA Education and Career Development Key Function Committee, formed the Education Core Competency Work Group to define the training standards for core competencies in clinical and translational research. The work group’s final recommendations for core competencies include fourteen thematic areas that should shape the training experiences of junior investigators by defining the skills, attributes, and knowledge that can be shared across multidisciplinary teams of clinician-scientists. The Clinical Research Education Program has recently adopted these program competencies for all students.

The CLR Program uses these thematic competencies to guide overall program learning objectives, overall curriculum development, and course-specific learning objectives. Students will be expected to achieve proficiency in these thematic areas in the course of class work, seminars, journal club, independent study and through the Master’s Thesis and/or PhD dissertation. Attainment of these respective competencies will be assessed through the satisfactory completion of course work.

Core competencies in clinical, translational and patient-oriented research core thematic areas are outlined as follows:

CLINICAL AND TRANSLATIONAL RESEARCH QUESTIONS

  • Identify basic and preclinical studies that are potential testable clinical research hypotheses

  • Identify research observations that could be the basis of large clinical trials

  • Define the data that formulate research hypotheses

  • Derive translational questions from clinical research data

  • Prepare the background and significance sections of a research proposal

  • Critique clinical and translational research questions using date-based literature searches

  • Extract information from the scientific literature that yields scientific insight for research innovation

LITERATURE CRITIQUE

  • Conduct a comprehensive and systematic search of the literature using informatics techniques

  • Summarize evidence from the literature on a clinical problem

  • Describe the mechanism of a clinical problem reviewed in a manuscript

  • Use evidence as the basis of the critique and interpretation of results of published studies

  • Identify potential sources of bias and variations in published studies

  • Interpret published literature in a causal framework

  • Identify gaps in knowledge within a research problem

STUDY DESIGN

  • Formulate a well-defined clinical or translational research question to be studied in human or animal models

  • Propose study designs for addressing a clinical or translational research question

  • Assess the strengths and weaknesses of possible study designs for a given clinical or translational research question

  • Design a research study protocol

  • Identify a target population for a clinical or translational research project

  • Identify measures to be applied to a clinical or translational research project

  • Design a research data analysis plan

  • Determine resources needed to implement a clinical or translational research plan

  • Prepare and application to the IRB

RESEARCH IMPLEMENTATION

  • Compare the feasibility, efficiency, and ability to derive unbiased inferences from different clinical and translational research study designs

  • Assess threats to internal validity in any planned or completed clinical or translational study, including selection bias, misclassification, and confounding

  • Incorporate regulatory precepts into the design of any clinical or translational study

  • Integrate elements of translational research into given study designs that could provide the basis for future research, such as the collection of biomedical specimens, nested studies, and the development of community-based interventions

SOURCES OF ERROR

  • Describe the concepts and implications of reliability and validity of study measurements

  • Evaluate the reliability and validity of measures

  • Assess threats to study validity (bias) including problems with sampling, recruitment, randomization, and comparability of study groups

  • Differentiate between the analytic problems that can be addressed with standard methods and those requiring input from biostatisticians and other scientific experts

  • Implement quality assurance systems with control procedures for data intake, management, and monitoring for different study designs

  • Assess data sources and data quality to answer specific clinical or translational research questions

  • Implement quality assurance and control procedures for different study designs and analysis

STATISTICAL APPROACHES

  • Describe the role that biostatistics serves in biomedical and public health research

  • Describe the basic principles and practical importance of random variation, systematic error, sampling error, measurement error, hypothesis testing, type I and type II errors, and confidence limits

  • Scrutinize the assumptions behind different statistical methods and their corresponding limitations

  • Generate simple descriptive and inferential statistics that fit the study design chosen and answer research question

  • Compute sample size, power, and precision for comparisons of two independent samples with respect to continuous and binary outcomes

  • Describe the uses of meta-analytic methods

  • Defend the significance of data and safety monitoring plans

  • Collaborate with biostatisticians in the design, conduct, and analyses of clinical and translational research

  • Evaluate computer output containing the results of statistical procedures and graphics

  • Explain the uses, importance, and limitations of early stopping rules in clinical trials

INFORMATICS

  • Describe and make use of best practices for developing research instruments and protocols and for communicating results of research that are appropriate to specific audiences and special populations, addressing literacy and numeracy, cultural attitudes, and special terminologies

  • Identify how structure and organization of information in a domain can impact researchers’ translational research foci through fundamental data categories and elements, terminologies and taxonomies, and ontologies

  • Discuss the fundamental principles and practices that address the ethical, legal, social, privacy, and security implications of biomedical and health informatics

  • Illustrate the nature of the contributions in consulting and/or collaborating with biomedical and health informaticians throughout the life cycle of individual clinical and translational research projects: use the terminology and principles of biomedical informatics to interact effectively with informaticians; discriminate among the different subdomains of biomedical informatics in order to identify the appropriate informatics consultant or collaborator; and enumerate the roles of biomedical informatics specialists in the design, development, and implementation of translational research projects

  • Describe the essential information generation, management, analysis, transformation, summarization, and visualization methods that apply to CTS data, such as: genomic, proteomic and other “-omics” data; clinical data; imaging data; consumer and patient-reported data; and population-level and environmental exposure data

  • Identify, retrieve, and manage biomedical and health science knowledge through literature searches using advanced search techniques (MeSH, PubMed, Google Scholar, etc.)

  • Explain the role of health information technology standards in the interoperability of research, clinical, and administrative information systems and on secondary use of data for clinical and translational science

  • Compare and contrast the organizational roles and principal responsibilities essential for access management, and governance of data related to clinical and translational science

  • Describe the essential functions of major research computer systems (e.g., clinical trials management systems, biospecimen management systems, research grant and finance management systems, and research services tracking systems) that are relevant to clinical and translational scientists

  • Describe the essential functions of the major clinical systems (e.g., EHR and its feeder systems, such as radiology and lab) that are relevant to clinical and translational scientists and the challenges to using these data for research

  • Utilize informatics-based tools in translational research including: locate relevant informatics tools; select appropriate informatics tools; and use those tools in research for managing and analyzing biomedical and health information

RESPONSIBLE CONDUCT OF RESEARCH

  • Clinical Research Ethics Competencies

    • Summarize the history of research abuses and the rational for creating codes, regulations, and systems for protecting participants in clinical research that requires community input

    • Critique a clinical or translational research proposal for risks to human subjects

    • Explain the special issues that arise in research with vulnerable participants and the need for additional safeguards

    • Determine the need for a risk-benefit ration that is in balance with the outcomes in clinical and translational research

    • Describe the elements of voluntary informed consent, including increasing knowledge about research, avoiding undue influence or coercion, and assuring the decision-making capacity of participants

    • Assure the need for privacy protection throughout all phases of a study

    • Assure the need for fairness in recruiting participants and in distributing the benefits and burdens of clinical research

    • Adhere to IRB application procedures

    • Explain how the structural arrangement of science and the research industry may influence the behavior of scientists and the production of scientific knowledge

  • Responsible Conduct of Research Competencies

    • Apply the main rules, guidelines, codes, and professional standards for the conduct of clinical and translational research

    • Adhere to the procedures to report unprofessional behavior by colleagues who engage in misconduct in research

    • Implement procedures for the identification, prevention, and management of financial, intellectual, and employment conflicts of interest

    • Apply the rules and professional standards that govern the data collection, sharing, and protection throughout all phases of clinical and translational research

    • Apply elements of voluntary informed consent, of fostering understanding of information about clinical research, and for avoiding undue influence or coercion, and taking into consideration the decision-making capacity of participants

    • Explain the need for privacy protection and best practices for protecting privacy throughout all phases of a study

    • Explain the need for fairness in recruiting participants and in distributing the benefits and burdens of clinical research

    • Explain the function of the IRB

SCIENTIFIC COMMUNICATION

  • Communicate clinical and translational research findings to different groups of individuals, including colleagues, students, the lay public and the media

  • Translate the implications of clinical and translational research findings for clinical practice, advocacy, and governmental groups

  • Write summaries of scientific information for use in the development of clinical health care policy

  • Translate clinical and translational research findings into national health strategies or guidelines for use by the general public

  • Explain the utility and mechanism of commercialization for clinical and translational research findings, the patent process, and technology transfer

CULTURAL DIVERSITY

  • Differentiate between cultural competency and cultural sensitivity principles

  • Recognize the demographic, geographic, and ethnographic features within communities and populations when designing a clinical study

  • Describe the relevance of cultural and population diversity in clinical research design

  • Describe cultural and social variation in standards of research integrity

  • Critique studies for evidence of health disparities, such as disproportional health effects on select populations (e.g. gender, age, ethnicity, race)

TRANSLATIONAL TEAMWORK

  • Build an interdisciplinary/intradisciplinary/multidisciplinary team that matches the objectives of the research problem

  • Manage an interdisciplinary team of scientists

  • Advocate for multiple points of view

  • Clarify language differences across disciplines

  • Demonstrate group decision-making techniques; manage conflict

  • Manage a clinical and/or translational research study

LEADERSHIP

  • Work as a leader of a multidisciplinary research team

  • Manage a multidisciplinary team across its fiscal, personnel, regulatory compliance and problem-solving requirements

  • Maintain skills as mentor and mentee

  • Validate others as a mentor

  • Foster innovation and creativity

CROSS DISCIPLINARY TRAINING

  • Apply principles of adult learning and competency-based instruction to educational activities

  • Provide clinical and translational science instruction to beginning scientists

  • Incorporate adult learning principles and mentoring strategies into interactions with beginning scientists and scholars in order to engage them in clinical and translational research

  • Develop strategies for overcoming the unique curricular challenges associated with merging scholars from diverse backgrounds

COMMUNITY ENGAGEMENT

  • Examine the characteristics that bind people together as a community, including social ties, common perspectives or interests, and geography

  • Appraise the role of community engagement as a strategy for identifying community health issues, translating health research to communities and reducing health disparities

  • Summarize the principles and practices of the spectrum of community-engaged research

  • Analyze the ethical complexities of conducting community-engaged research

  • Specify how cultural and linguistic competence and health literacy have an impact on the conduct of community-engaged research

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